{"id":73,"date":"2016-03-09T15:32:29","date_gmt":"2016-03-09T14:32:29","guid":{"rendered":"http:\/\/www.doc.gold.ac.uk\/dockit\/wp\/?page_id=73"},"modified":"2016-09-21T19:29:59","modified_gmt":"2016-09-21T18:29:59","slug":"visuals","status":"publish","type":"page","link":"http:\/\/www.doc.gold.ac.uk\/dockit\/wp\/?page_id=73","title":{"rendered":"Visuals"},"content":{"rendered":"<h4>Videos:<\/h4>\n<p>Short demo video for New Scientist Live (September 2016): <a href=\"https:\/\/youtu.be\/zWSMPIO9BYA\" target=\"_blank\">https:\/\/youtu.be\/zWSMPIO9BYA <\/a><\/p>\n<p>Short demo video (early March 2016): <a href=\"https:\/\/youtu.be\/9fynQ7wqsTo\" target=\"_blank\">https:\/\/youtu.be\/9fynQ7wqsTo<\/a><\/p>\n<p>Short demo video (end of January 2016): <a href=\"https:\/\/youtu.be\/auPNKAzk_ac\" target=\"_blank\">https:\/\/youtu.be\/auPNKAzk_ac<\/a><\/p>\n<p>&nbsp;<\/p>\n<h4>Sample images:<\/h4>\n<figure id=\"attachment_87\" aria-describedby=\"caption-attachment-87\" style=\"width: 300px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/1.png\" rel=\"attachment wp-att-87\"><img loading=\"lazy\" class=\"size-medium wp-image-87\" src=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/1.png?resize=300%2C170\" alt=\"BioBlox (11\/03\/16): Step 0: Start - proteins loaded.\" width=\"300\" height=\"170\" srcset=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/1.png?resize=300%2C170 300w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/1.png?resize=768%2C434 768w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/1.png?resize=1024%2C579 1024w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/1.png?w=1583 1583w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/1.png?w=1208 1208w\" sizes=\"(max-width: 300px) 100vw, 300px\" data-recalc-dims=\"1\" \/><\/a><figcaption id=\"caption-attachment-87\" class=\"wp-caption-text\">BioBlox (11\/03\/16): Step 0: Start &#8211; proteins loaded.<\/figcaption><\/figure>\n<figure id=\"attachment_91\" aria-describedby=\"caption-attachment-91\" style=\"width: 300px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/5.png\" rel=\"attachment wp-att-91\"><img loading=\"lazy\" class=\"size-medium wp-image-91\" src=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/5.png?resize=300%2C170\" alt=\"BioBlox (11\/03\/16): Step 1: Select amino acids to pair.\" width=\"300\" height=\"170\" srcset=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/5.png?resize=300%2C170 300w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/5.png?resize=768%2C434 768w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/5.png?resize=1024%2C579 1024w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/5.png?w=1583 1583w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/5.png?w=1208 1208w\" sizes=\"(max-width: 300px) 100vw, 300px\" data-recalc-dims=\"1\" \/><\/a><figcaption id=\"caption-attachment-91\" class=\"wp-caption-text\">BioBlox (11\/03\/16): Step 1: Select amino acids to pair.<\/figcaption><\/figure>\n<figure id=\"attachment_88\" aria-describedby=\"caption-attachment-88\" style=\"width: 300px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/2.png\" rel=\"attachment wp-att-88\"><img loading=\"lazy\" class=\"size-medium wp-image-88\" src=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/2.png?resize=300%2C170\" alt=\"BioBlox (11\/03\/16): Step 2: select sites (up to 3) to match.\" width=\"300\" height=\"170\" srcset=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/2.png?resize=300%2C170 300w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/2.png?resize=768%2C434 768w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/2.png?resize=1024%2C579 1024w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/2.png?w=1583 1583w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/2.png?w=1208 1208w\" sizes=\"(max-width: 300px) 100vw, 300px\" data-recalc-dims=\"1\" \/><\/a><figcaption id=\"caption-attachment-88\" class=\"wp-caption-text\">BioBlox (11\/03\/16): Step 2: select sites (up to 3) to match.<\/figcaption><\/figure>\n<figure id=\"attachment_89\" aria-describedby=\"caption-attachment-89\" style=\"width: 300px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/3.png\" rel=\"attachment wp-att-89\"><img loading=\"lazy\" class=\"size-medium wp-image-89\" src=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/3.png?resize=300%2C170\" alt=\"BioBlox (11\/03\/16): Step 3: Cutaway tool used to visualise interiors.\" width=\"300\" height=\"170\" srcset=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/3.png?resize=300%2C170 300w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/3.png?resize=768%2C434 768w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/3.png?resize=1024%2C579 1024w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/3.png?w=1583 1583w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/3.png?w=1208 1208w\" sizes=\"(max-width: 300px) 100vw, 300px\" data-recalc-dims=\"1\" \/><\/a><figcaption id=\"caption-attachment-89\" class=\"wp-caption-text\">BioBlox (11\/03\/16): Step 3: Cutaway tool used to visualise interiors.<\/figcaption><\/figure>\n<figure id=\"attachment_90\" aria-describedby=\"caption-attachment-90\" style=\"width: 300px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/4.png\" rel=\"attachment wp-att-90\"><img loading=\"lazy\" class=\"size-medium wp-image-90\" src=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/4.png?resize=300%2C170\" alt=\"BioBlox (11\/03\/16): Step 4: \" width=\"300\" height=\"170\" srcset=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/4.png?resize=300%2C170 300w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/4.png?resize=768%2C434 768w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/4.png?resize=1024%2C579 1024w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/4.png?w=1583 1583w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/4.png?w=1208 1208w\" sizes=\"(max-width: 300px) 100vw, 300px\" data-recalc-dims=\"1\" \/><\/a><figcaption id=\"caption-attachment-90\" class=\"wp-caption-text\">BioBlox (11\/03\/16): Step 4:<\/figcaption><\/figure>\n<figure id=\"attachment_92\" aria-describedby=\"caption-attachment-92\" style=\"width: 300px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/6.png\" rel=\"attachment wp-att-92\"><img loading=\"lazy\" class=\"size-medium wp-image-92\" src=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/6.png?resize=300%2C170\" alt=\"BioBlox (11\/03\/16): Step 5: Docking achieved with scoring.\" width=\"300\" height=\"170\" srcset=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/6.png?resize=300%2C170 300w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/6.png?resize=768%2C434 768w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/6.png?resize=1024%2C579 1024w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/6.png?w=1583 1583w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/6.png?w=1208 1208w\" sizes=\"(max-width: 300px) 100vw, 300px\" data-recalc-dims=\"1\" \/><\/a><figcaption id=\"caption-attachment-92\" class=\"wp-caption-text\">BioBlox (11\/03\/16): Step 5: Docking achieved with scoring.<\/figcaption><\/figure>\n<figure id=\"attachment_78\" aria-describedby=\"caption-attachment-78\" style=\"width: 300px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/2PTC_MEDIAL.jpg\" rel=\"attachment wp-att-78\"><img loading=\"lazy\" class=\"size-medium wp-image-78\" src=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/2PTC_MEDIAL.jpg?resize=300%2C169\" alt=\"Art poster at VizBi 2016. Illustration of protein docking.\" width=\"300\" height=\"169\" srcset=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/2PTC_MEDIAL.jpg?resize=300%2C169 300w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/2PTC_MEDIAL.jpg?resize=768%2C432 768w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/2PTC_MEDIAL.jpg?resize=1024%2C576 1024w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/2PTC_MEDIAL.jpg?w=1280 1280w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/2PTC_MEDIAL.jpg?w=1208 1208w\" sizes=\"(max-width: 300px) 100vw, 300px\" data-recalc-dims=\"1\" \/><\/a><figcaption id=\"caption-attachment-78\" class=\"wp-caption-text\">Art poster at VizBi 2016. Illustration of protein docking.<\/figcaption><\/figure>\n<figure id=\"attachment_77\" aria-describedby=\"caption-attachment-77\" style=\"width: 300px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/fold-2011.03.29-01.28.38.png\" rel=\"attachment wp-att-77\"><img loading=\"lazy\" class=\"size-medium wp-image-77\" src=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/fold-2011.03.29-01.28.38.png?resize=300%2C260\" alt=\"Protein docking in FoldSynth, with intermediary medial surface.\" width=\"300\" height=\"260\" srcset=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/fold-2011.03.29-01.28.38.png?resize=300%2C260 300w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/fold-2011.03.29-01.28.38.png?resize=768%2C666 768w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/fold-2011.03.29-01.28.38.png?resize=1024%2C887 1024w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/fold-2011.03.29-01.28.38.png?w=1154 1154w\" sizes=\"(max-width: 300px) 100vw, 300px\" data-recalc-dims=\"1\" \/><\/a><figcaption id=\"caption-attachment-77\" class=\"wp-caption-text\">Protein docking in FoldSynth, with intermediary medial surface.<\/figcaption><\/figure>\n<figure id=\"attachment_76\" aria-describedby=\"caption-attachment-76\" style=\"width: 300px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/fold-2011.03.29-01.28.22.png\" rel=\"attachment wp-att-76\"><img loading=\"lazy\" class=\"size-medium wp-image-76\" src=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/fold-2011.03.29-01.28.22.png?resize=300%2C260\" alt=\"Docking with medial surface (ribbons visualisation).\" width=\"300\" height=\"260\" srcset=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/fold-2011.03.29-01.28.22.png?resize=300%2C260 300w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/fold-2011.03.29-01.28.22.png?resize=768%2C666 768w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/fold-2011.03.29-01.28.22.png?resize=1024%2C887 1024w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/fold-2011.03.29-01.28.22.png?w=1154 1154w\" sizes=\"(max-width: 300px) 100vw, 300px\" data-recalc-dims=\"1\" \/><\/a><figcaption id=\"caption-attachment-76\" class=\"wp-caption-text\">Docking with medial surface (ribbons visualisation).<\/figcaption><\/figure>\n<figure id=\"attachment_75\" aria-describedby=\"caption-attachment-75\" style=\"width: 300px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/DockWithDoubleMatrix.png\" rel=\"attachment wp-att-75\"><img loading=\"lazy\" class=\"size-medium wp-image-75\" src=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/DockWithDoubleMatrix.png?resize=300%2C260\" alt=\"Docking of 2 proteins via FoldSynth UI (with combined contact maps shows at bottom).\" width=\"300\" height=\"260\" srcset=\"https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/DockWithDoubleMatrix.png?resize=300%2C260 300w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/DockWithDoubleMatrix.png?resize=768%2C666 768w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/DockWithDoubleMatrix.png?resize=1024%2C887 1024w, https:\/\/i0.wp.com\/www.doc.gold.ac.uk\/dockit\/wp\/wp-content\/uploads\/2016\/03\/DockWithDoubleMatrix.png?w=1154 1154w\" sizes=\"(max-width: 300px) 100vw, 300px\" data-recalc-dims=\"1\" \/><\/a><figcaption id=\"caption-attachment-75\" class=\"wp-caption-text\">Docking of 2 proteins via FoldSynth UI (with combined contact maps shows at bottom).<\/figcaption><\/figure>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Videos: Short demo video for New Scientist Live (September 2016): https:\/\/youtu.be\/zWSMPIO9BYA Short demo video (early March 2016): https:\/\/youtu.be\/9fynQ7wqsTo Short demo video (end of January 2016): https:\/\/youtu.be\/auPNKAzk_ac &nbsp; Sample images: &nbsp; &nbsp; &nbsp; &nbsp;<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"jetpack_post_was_ever_published":false},"jetpack_sharing_enabled":true,"jetpack_shortlink":"https:\/\/wp.me\/P7Vgbi-1b","_links":{"self":[{"href":"http:\/\/www.doc.gold.ac.uk\/dockit\/wp\/index.php?rest_route=\/wp\/v2\/pages\/73"}],"collection":[{"href":"http:\/\/www.doc.gold.ac.uk\/dockit\/wp\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/www.doc.gold.ac.uk\/dockit\/wp\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/www.doc.gold.ac.uk\/dockit\/wp\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.doc.gold.ac.uk\/dockit\/wp\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=73"}],"version-history":[{"count":7,"href":"http:\/\/www.doc.gold.ac.uk\/dockit\/wp\/index.php?rest_route=\/wp\/v2\/pages\/73\/revisions"}],"predecessor-version":[{"id":114,"href":"http:\/\/www.doc.gold.ac.uk\/dockit\/wp\/index.php?rest_route=\/wp\/v2\/pages\/73\/revisions\/114"}],"wp:attachment":[{"href":"http:\/\/www.doc.gold.ac.uk\/dockit\/wp\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=73"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}